Welcome to PynamiX’s documentation!

PynamiX is a python package for processing radiographs. It contains the following modules:

• Project Modules
• Color
• Data
• Exposure
• IO
• Measure
• Plotting

There are also some jupyter notebook included in the package that contains a helpful guide on getting started and some basic use cases:

• PynamiX example notebook
  • Load example data
  • Apply an ROI
  • Find min and max threshold values
  • Apply threshold
  • Calculate size and orientation fields
  • Load some PIVLab data
• Calculate fibre orientation from a photograph
  • Load example data
  • Show example data
  • (Optionally) apply an ROI
  • Calculate orientation field
• Calculate bidisperse concentration field
  • Load example data
  • Apply an ROI to remove weird external box from James’s data
  • Get bidisperse values
  • Plot peak fraction
  • Investigate wavelength decomposition
  • Do everything in one go
• Convert photos of hydrogels to SEQ file
  • Load data

Indices and tables

• Index

• Module Index

• Search Page